medusa.reconstruct.load_from_file

Module Contents

medusa.reconstruct.load_from_file.parent_attr_of_base_component(base_comp)

Output a string to indicate the parent attribute of the cobra.core object.

Parameters:base_comp (cobra.core object) – Ensemble base_component of feature. i.e. cobra reaction, metabolite, or gene

medusa.reconstruct.load_from_file.batch_load_from_files(model_file_names, identifier='ensemble', batchsize=5, verbose=False)

Loads a list of models my file name in batches to and generates an ensemble object. This function is meant to be used to limit how much flash memory is required to generate very large ensembles.

Parameters:

• model_jsons (List) – List of json cobra.model file names.
• batchsize (Integer) – Total number of models loaded into memory.

medusa.reconstruct.load_from_file.add_ensembles(e1, e2, verbose=False)

Adds two ensemble objects together.

Parameters:& e2 (e1) – Generated using medusa.core.Ensemble()