medusa
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Getting Started

  • Why?
    • Where do ensembles come from?
  • Installation

Examples

  • Parallelized simulations
  • Applying machine learning to guide ensemble curation
  • Statistical testing for ensemble simulations
  • Assessing ensemble performance via ROC

User Guide

  • Introduction to Medusa
    • Loading an example ensemble and inspecting its parts
    • Components of an ensemble: base_model
    • Components of an ensemble: members
    • Components of an ensemble: features
    • Strategies for getting information about an ensemble and its members
  • Creating an ensemble
    • Expanding a network
    • Input for gapfilling
    • Degrading a network
      • References
  • Performing ensemble simulations
    • Ensemble Flux Balance Analysis
    • Flux Variability Analysis
    • Gene and Reaction Deletions
  • Input and output
  • Ensemble Size and Speed Benchmarking
    • Ensemble memory requirements during use and when saved
    • Flux analysis speed testing
  • Benchmarking ensemble generation
  • FAQ
  • Sphinx AutoAPI Index
    • medusa
      • Subpackages
        • medusa.core
        • medusa.flux_analysis
        • medusa.quality
        • medusa.reconstruct
        • medusa.test
      • Package Contents
        • __version__
medusa
  • Docs »
  • medusa.reconstruct
  • Edit on GitHub

medusa.reconstruct¶

Submodules¶

  • medusa.reconstruct.degrade
  • medusa.reconstruct.expand
  • medusa.reconstruct.load_from_file

© Copyright 2018, Gregory Medlock Revision d4d85fb3.

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