`medusa.core.member`¶

Module Contents¶

class medusa.core.member.Member(ensemble=None, identifier=None, name=None, states=None)¶

Bases:cobra.core.object.Object

Object representing an individual member (i.e. model) in an ensemble

Parameters:

identifier (string) – The identifier to associate with the member.
ensemble (medusa.core.ensemble.Ensemble object) – The ensemble that the member belongs to.
states (dictionary of medusa.core.feature.Feature:component_attribute value) – dictionary of Features mapping to the value of the Feature’s component_attribute (value type depends on component_attribute type, e.g. float for “lb”, string for “_gene_reaction_rule”) for the member.

to_model(self)¶

Generate a cobra.Model object with the exact state of this member.

The resulting cobra.Model does not contain any Metabolites, Genes, or Reactions that were inactive in the member.

Returns:	model – The extracted member as a cobrapy model.
Return type:	cobra.Model